PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 541aa    MW: 59675.2 Da    PI: 4.6589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-1466114148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+W++eEd  l+++++ +G+g +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr8P25970_001  66 RGPWSPEEDMVLKKYIEGHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 114
                            89*********************************************97 PP
2Myb_DNA-binding292.4e-09123165446
                            S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                            +T eEd+++    ++lG+     +W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr8P25970_001 123 FTDEEDDIIC---ALLGNSlictRWSVIASQLP-GRTDNDIKNYWNT 165
                            7888888875...56787788899*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.29961118IPR017930Myb domain
SuperFamilySSF466897.03E-2364163IPR009057Homeodomain-like
SMARTSM007171.7E-1065116IPR001005SANT/Myb domain
PfamPF002492.6E-1366114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2367121IPR009057Homeodomain-like
CDDcd001671.35E-768114No hitNo description
PROSITE profilePS5129411.144119171IPR017930Myb domain
SMARTSM007177.1E-8119169IPR001005SANT/Myb domain
PfamPF002491.2E-7122165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-19122170IPR009057Homeodomain-like
CDDcd001673.49E-8123167No hitNo description
TIGRFAMsTIGR016759.6E-83322541IPR010028Acid phosphatase, plant
PfamPF037671.2E-62324540IPR005519Acid phosphatase, class B-like
SuperFamilySSF567842.5E-16384538IPR023214HAD-like domain
Gene3DG3DSA:3.40.50.10003.1E-11389523IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003993Molecular Functionacid phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MPTLSSFSYH PLTVQTRSEQ PLFASLFTTR LLFPAGGELG SASLSVLVAG EVMGRTPCCD  60
KAQVKRGPWS PEEDMVLKKY IEGHGTGGNW IALPQKAGLK RCGKSCRLRW LNYLRPDIKH  120
GGFTDEEDDI ICALLGNSLI CTRWSVIASQ LPGRTDNDIK NYWNTKLKKR RTMAMAAAQA  180
PSSNNTTSID TIVDRINDFP RPPPPSTSPV VIPIVKDETY TCDDFLKPVV PSPPVSATTD  240
TGLGFGRYDS PPVVAGLAGP PRVQLNASDA SSLVTVDDGS LYSDWWTNGS GDTDEFFLEF  300
GGEVPMEFLT NPAPGRSTDG EGVADRLFCD SWRLSVETND AGYWRTIPQK CLKFVEDYVN  360
GDRYASDFDV ISSESLSFAE TVPIAGDGKD VWIFDIDETL LSNVPYYAIN GYGSEVFNET  420
SFDEWVDLAR APALPASLRL YEELIGLGFQ MVLLTGRSEN QRNSTENNLL YAGYHSWITL  480
ILRQTSDLGK PALVYKSERR AALEAQGFRI HGSSGDQWSD LLGLPLAKRS FKLPNPMYYV  540
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fyp_A1e-4032954042253Vegetative storage protein 1
4fyp_B1e-4032954042253Vegetative storage protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415368.20.0PREDICTED: myb-related protein Zm38-like
TrEMBLM0TTQ00.0M0TTQ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25970_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-64myb domain protein 84