PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 428aa    MW: 48949.9 Da    PI: 6.4972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-071336226
                           -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                           ++ lC++far GtC  G+ C F+H+
  GSMUA_Achr8P25640_001 13 RRILCKYFAR-GTCLKGEYCEFSHD 36
                           6789******.*************5 PP
2zf-CCCH26.51.1e-084463525
                           --SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                            C+f++r G C yG+rCk++H
  GSMUA_Achr8P25640_001 44 VCNFYQR-GLCTYGSRCKYNH 63
                           5**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4831138IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-51137IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-41336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-71436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-41638IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3943966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54063IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-44165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-44463IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-64463IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.967152179IPR000571Zinc finger, CCCH-type
SMARTSM003564.7153178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.7E-10205281IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.7E-13211285No hitNo description
CDDcd001622.89E-4220281No hitNo description
PfamPF000971.4E-7221278IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.43221279IPR001841Zinc finger, RING-type
SMARTSM001846.9E-8221278IPR001841Zinc finger, RING-type
PROSITE patternPS005180245254IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.61308337IPR000571Zinc finger, CCCH-type
SMARTSM003560.019308336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPTSSSPLPS MPRRILCKYF ARGTCLKGEY CEFSHDWRDQ SNNVCNFYQR GLCTYGSRCK  60
YNHIGVSSHN SYDPASSISH QSYHVESSSS QFAHPPRASL KGETSQAFRI PVDLPVSCQS  120
HTPPLEHAQK QKHGADISPS NEGSHVPAHM RPADSEICAL HITGSCLHGK SCPDVHGDMC  180
SICEMHCLHP FHQDKREEHI TMCQKNNKLH ETTKYSQEIE CSICLERVLS KPTDAERKFG  240
ILSECDHPFC ISCIRNWRRN SPASGIDLDT ALRACPVCRK HSYFVVPSVT WFTTKEEKQE  300
IITSYKDKLK LIDCKYFDFG NGTCPFGASC FYKHTYKPHA NRRSAYRPHR NRPHPHRSRQ  360
IMEREEIEDF INPFALEDEL ANLAALLDVD EEESEDLDEE DFGSLLLMHM SFLLMHMDDE  420
ELLSDDDN
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415411.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ5ZA071e-124C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM0TTL70.0M0TTL7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-106C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]