PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 683aa    MW: 72986.2 Da    PI: 9.7966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101246338
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                            W t+E++ll++av+++G+++W+++a +++  Rt+ 
  GSMUA_Achr8P25530_001 12 IWGTWEELLLACAVNRHGTRRWDSVAIEIQ-SRTPA 46
                           6*****************************.88864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2E-5965IPR001005SANT/Myb domain
SuperFamilySSF466896.01E-61065IPR009057Homeodomain-like
CDDcd001673.07E-71362No hitNo description
PfamPF002496.0E-101361IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-41369IPR009057Homeodomain-like
SMARTSM002972.1E-4263374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.1E-12270393IPR001487Bromodomain
SuperFamilySSF473702.49E-12272385IPR001487Bromodomain
CDDcd043692.57E-12274369No hitNo description
PfamPF004399.9E-7279359IPR001487Bromodomain
PROSITE profilePS500149.835282355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MARSSDLEER EIWGTWEELL LACAVNRHGT RRWDSVAIEI QSRTPASHLI TPHGCRQRYR  60
DLQRRFSAGA VNGSGDDDGG EDDPHPPADV PWLEELRRLR VAELRREVQR YDLSIGSLQL  120
KVKRLQDERE RSARDAESGD GKPVVDAKKG GGAPGSTPES LSGNRISSGG DSGPSCEQSN  180
STDPKQKAGE DCREPEEEGA FAGAGSDAAE PSTGGDEKAA EVEEGEKESS DVQSSVSLSR  240
RRGTAIIGGG GVEEPEAEEA SIMSGVVAAA SQPLVSLLEI IRSHKYGSVF ERRLESQESV  300
RYRSIVRQHV DLEMVRAKLD AVEPGRSYAT SEFFRDLLLL CGNTTVFYPK DSPEFAAAVH  360
LRRLVTKEMA TTVLTPTEPT PQPPPPPPPP EPKPTASKSE TEPDLSSGLV DKPNSSPLLI  420
ACRKRSSTSN KPAVAAVEKE EKSDPARIES DNEEKSLPKK TTKERSVRSG RTRGWRTSKV  480
RGGNGEGSPA AKRSNVAPSP CLKSKPVENV AAVGEAAKPD KNTGGGAATC AASTAKKQGS  540
TGFLKRMKRN PKGAIEEMPK RSSGGVSGGG GGGSGRGTEQ KKEAKGGARK EQGSRQGSTG  600
GGGSGGSGKK VAETSGGSAK RGVGRPPKRA REEAEIAAPS KAPASASRKR RRISFSFSFS  660
FLISFLDFKF FQRWTTKFTF NLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1647651RKRRR
2648652KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415428.10.0PREDICTED: bromodomain-containing protein bet-1 isoform X1
TrEMBLM0TTK60.0M0TTK6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-26DNA-binding bromodomain-containing protein