PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P24960_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 276aa MW: 30387 Da PI: 10.2947 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.2e-13 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +v+++G g W+tI + +R+ ++k++w++ GSMUA_Achr8P24960_001 5 KQKWTAEEEEALRAGVEKHGAGKWRTIQKDPEfsrclATRSNIDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.022 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.33E-21 | 6 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 3.8E-14 | 110 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.32E-14 | 111 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.0E-12 | 111 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.981 | 113 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.7E-10 | 115 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGAPKQKWTA EEEEALRAGV EKHGAGKWRT IQKDPEFSRC LATRSNIDLK DKWRNMSISA 60 GGHGSREKIR TLKAKSLPAI PLSSSKSLVV SAPHKDAAPV IADPTKSLQE SKTPPRYATM 120 IIEALASMKE SNGSEIGAIC SFIEQRHEVP QNFRRLLSSK LRRLVTQNKI EKVQKGYRLK 180 ESCFATKTPT PKQKELASRA RVPQTSGPAN SIDPMKEAAI TAAYKIADSE AKSFLASEAV 240 KEAEKISKMA EETDSLLLLA KEIFERCARG EIVTIA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF569174 | 1e-38 | HF569174.1 Saccharum officinarum mRNA for MYB-related protein (myb68 gene), cultivar Co86032. | |||
GenBank | HF679426 | 1e-38 | HF679426.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB20 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415489.1 | 0.0 | PREDICTED: single myb histone 4 | ||||
Swissprot | Q6WLH4 | 3e-85 | SMH3_MAIZE; Single myb histone 3 | ||||
TrEMBL | M0TTE9 | 0.0 | M0TTE9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P24960_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9247 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 3e-69 | MYB_related family protein |
Publications ? help Back to Top | |||
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