PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 1067aa    MW: 118810 Da    PI: 6.8943
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-21171272199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      ++++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv  ++L +gD+v+F
  GSMUA_Achr8P23850_001 171 FCKTLTASDTSTHGGFSVPRRAAEKNfppldfSMQPPS-QELQARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGGKRLFAGDSVLF 257
                            99*****************************9556554.69*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++++l+++++r+
  GSMUA_Achr8P23850_001 258 I--RDKKQQLLLGIRRA 272
                            *..5578889****997 PP
2Auxin_resp115.93.4e-38297380183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+W +L+
  GSMUA_Achr8P23850_001 297 AAHAAANHSPFTVFYNPRASPSEFVVPFAKYQKAVYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWCNLQ 380
                            79*********************************989******************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-42161300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-40164286IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-18170262No hitNo description
PROSITE profilePS5086311.406171273IPR003340B3 DNA binding domain
PfamPF023627.7E-20171272IPR003340B3 DNA binding domain
SMARTSM010191.8E-21171273IPR003340B3 DNA binding domain
PfamPF065073.0E-33297380IPR010525Auxin response factor
PfamPF023098.6E-99311019IPR033389AUX/IAA domain
PROSITE profilePS5174527.8399341018IPR000270PB1 domain
SuperFamilySSF542772.16E-79391012No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MKAAANGAAV PNPCEGESIF QLALAVLSAA GGGLWMTRVA VTGDRNTINP ELWHACAGPL  60
VTLPPVGSLV VYFPQGHSEQ YLLKSNPVAA SMQKDIDAHV PNYPNLPSKL ICLLHNVTLH  120
ADLETDEVYA QMTLQPANSQ IQWLLPRTLK PISHCSSELA LKQTRPQTEF FCKTLTASDT  180
STHGGFSVPR RAAEKNFPPL DFSMQPPSQE LQARDLHDNL WTFRHIYRGQ PKRHLLTTGW  240
SLFVGGKRLF AGDSVLFIRD KKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA  300
AANHSPFTVF YNPRASPSEF VVPFAKYQKA VYSNQISLGM RFRMMFETEE LGTRRYMGTI  360
TGISDLDPVR WKNSQWCNLQ VGWDESAAGE RRNRVSIWDI EPVVAPFFIC PPPFFRKRPI  420
PPGVPDDESS EMEIFFKRAM PWLGEEICIK DSQTQSTIMP GLSLVQWMNL QQNPSLANQT  480
LLAETLQSLN GAVMQNLGTT DLCRQYDLTV QTKHQFVNQA LPNQRHNNVV QPQVLVQTQV  540
QPQQQPVLQN NQLSQSSLPQ DQQHPQQLLL QQLRQQLQQQ QHQQQHHQQL QQQYEQQQSR  600
TPVMPQQQQQ QSFSQSRMQQ PQHSQIQEYQ KAAIDVPQQL SNSHAQVQQP AILQQCAKAI  660
SQVARPQTFQ NQPQQNPPQQ QLLHGELHRA FLPASPATNL IRASGSLLGA GRAQSGVTDD  720
IPSCSTSPSA NNVVILPDSI LNRTQHCNIS TEKMSQSLLI PISKVQNQAV VAPQTYISNA  780
VQMDCLDTTS SATSVCLSQT DGPLRQSLPL SSSNQPSMLR DPLPDIDVQG TDPRNSLLFG  840
VNIDDSLGIP LATDSLLINN VDSGKYQNHI AGNVVANYNT SKDIQQELSS TMVSQSFGVP  900
DMAFNSINST TNENGFLNKN SWVPTPPLPL QRMRTYTKVY KRGAVGRSID VTHYSGYDEL  960
KHDLARMFSI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ  1020
QMSLDVDLGN NNLPNQACNS SDGGNPLRGH GDQNSGNPSA GSYDRFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1634240144388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413972.10.0PREDICTED: auxin response factor 19-like
TrEMBLM0TT380.0M0TT38_MUSAM; Auxin response factor
STRINGGSMUA_Achr8P23850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19