PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 341aa    MW: 37314.2 Da    PI: 7.2456
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.94.8e-1777166186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  + aLi+a  e+  +l+rg+lk+++W+ev++++ ++ g+++ pk   qCk++++ l+k+yk +k   ++ + +++ ++p+f++
  GSMUA_Achr8P23650_001  77 CWSDGATSALIDAWGERYLELSRGNLKQKQWQEVADAVtSRDGYTKAPKtdvQCKNRIDTLKKKYKIEKSKISSSAGGATPSWPFFHR 164
                            7*************************************878899876643339*********************9999********** PP

               trihelix  85 le 86 
                            l+
  GSMUA_Achr8P23650_001 165 LD 166
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2675166No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDDDDAQSP SRSLSQSPSP PPVSVVPPSS SPSASPHQPN GRIDEPVTVA AAPQHAVPIR  60
QLRASPGPAS GGGREDCWSD GATSALIDAW GERYLELSRG NLKQKQWQEV ADAVTSRDGY  120
TKAPKTDVQC KNRIDTLKKK YKIEKSKISS SAGGATPSWP FFHRLDLLLG PTHKPAPPPP  180
SSTIPAGVRS SPALASKSAG SSADSSDGFP PPPPKEANGK RLHQEPVEEE GEEQRTADLR  240
ELAQAILKFG EVYERVESSK LRQAMEMEKQ RLEFTRELEL QRMEFLMKTQ MELSQLRSHH  300
HGNSRKRKFD DAGGSSNHHH HHRNHDDNNN SSNSNISGND G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414005.11e-165PREDICTED: trihelix transcription factor ASIL2
TrEMBLM0TT180.0M0TT18_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P23650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-37sequence-specific DNA binding transcription factors