PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P21880_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HRT-like

Protein Properties

Length: 393aa MW: 44417.5 Da PI: 9.5448

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P21880_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.4	1e-17	300	330	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv edG +C+r+Pv+gRKRCeeHKG+R+ GSMUA_Achr8P21880_001 300 ICGVVAEDGDICRRKPVPGRKRCEEHKGKRV 330 8*****************************7 PP
2	HRT-like	49.1	9.4e-16	346	376	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dGs+C++ P + RKRC +HKG+++ GSMUA_Achr8P21880_001 346 VCGVHLDDGSICMNLPLPARKRCTKHKGRKV 376 7***************************986 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MMDSSRLRRE ECHRTKHDSV FSDWKIVIGS SDWEDHSLGK NGAERYKIHN LPASCSCPGL 60 YELGIAVTPT DGRGTKTRQQ ALKDIVVVYL GQADNVRTRL QQYGRAGSHL DHGNSFTYSA 120 ESETPCLQKG PGLFKEIFSK GYSIVYRWAP MKDKKEAEKM EEQLLNFFDY AWNRRGNGAC 180 RREDILLKLD KASTRSNSGL LSKFKQWKWP VLSKNVGIKI DAGLSIDEAE SEKTRGFLPQ 240 IFKFVKSQRQ SVQPNDNLTQ DEKVCGHQRI PHIYKSSSGW ESWPPAEEMQ KLIPILEVNI 300 CGVVAEDGDI CRRKPVPGRK RCEEHKGKRV TGSGTSSSAE TVRSYVCGVH LDDGSICMNL 360 PLPARKRCTK HKGRKVTKIG QPEQETAKLT FQQ

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MMDSSRLRRE ECHRTKHDSV FSDWKIVIGS SDWEDHSLGK NGAERYKIHN LPASCSCPGL  60
YELGIAVTPT DGRGTKTRQQ ALKDIVVVYL GQADNVRTRL QQYGRAGSHL DHGNSFTYSA  120
ESETPCLQKG PGLFKEIFSK GYSIVYRWAP MKDKKEAEKM EEQLLNFFDY AWNRRGNGAC  180
RREDILLKLD KASTRSNSGL LSKFKQWKWP VLSKNVGIKI DAGLSIDEAE SEKTRGFLPQ  240
IFKFVKSQRQ SVQPNDNLTQ DEKVCGHQRI PHIYKSSSGW ESWPPAEEMQ KLIPILEVNI  300
CGVVAEDGDI CRRKPVPGRK RCEEHKGKRV TGSGTSSSAE TVRSYVCGVH LDDGSICMNL  360
PLPARKRCTK HKGRKVTKIG QPEQETAKLT FQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414197.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	M0TSJ1	0.0	M0TSJ1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P21880_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-73	effector of transcription2