PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P20810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 651aa    MW: 71405.9 Da    PI: 8.5145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P20810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07550599147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r +++  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  GSMUA_Achr8P20810_001 550 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFenaNHRTYVDLKDKWKTL 599
                            6789999********************999989999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.86E-6356443IPR029071Ubiquitin-related domain
PROSITE profilePS500539.374358428IPR000626Ubiquitin domain
PROSITE profilePS5129415.019545604IPR017930Myb domain
SMARTSM007175.1E-7549602IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-10550600IPR009057Homeodomain-like
SuperFamilySSF466891.35E-15551632IPR009057Homeodomain-like
CDDcd116603.51E-17551601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVLQKRVDCG SSGYQAPVMP HFPRSAKGKR SVRKKVEDNQ MCAFDLLATV AGNLLSEREN  60
SLTPCNDTGT SNTVAVKDTV NQDQLDKEKP CKLEAFDWLR CSEDLSGPEN DLKMQIKHDI  120
RENTSKATSP YSSPAGSLEC KEDGSKTPQQ AERLVAGNAV DGNAPHTYSL NDAMDLDGKT  180
PALVSSDSSF EVPLYRKNTP CNSSFPKQDE CMDLPIDKDG DENSSGCTHP TIVTNKASRL  240
QRIGDRRIRK LLASKFWKVS PTMLQDDVDQ KPALRGKRMC YTRQRTQRSS FKRRKLFYNC  300
SVSASDGGIY SEGVSNICEK GRIKLETNDL HATWFGANSA PSSTTGQKPC CELPDYHVKL  360
SIKSFKVPEL LIEIPETATV GSLKRTVSEA VTAILGGGLR IGVLLQGKKV RHDNKTLRQA  420
GISQGDKLDN LGFTLEPNPG QAPAPLTGSE DPHFLGLGCA PEPLPLARIP PTAPATTDQR  480
VSDASPQPMT TCPESDHDSV YSPADASSPE KTTANSLALV AVPPTNVEAL AMVPLRSKPK  540
RPEAAQRRVR RPFSVAEVEA LVQAVEKLGT GRWRDVKLCA FENANHRTYV DLKDKWKTLV  600
HTARISPQQR RGEPVPQELL DRVLAAHAYW SQHQAKLQLK PPPSAEICQL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-545346411108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244250DRRIRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260520.0AC226052.1 Musa balbisiana clone BAC MBP-64B17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414324.10.0PREDICTED: telomere repeat-binding protein 2
TrEMBLM0TS840.0M0TS84_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P20810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-93TRF-like 2