PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P20710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 260aa    MW: 29172 Da    PI: 7.3766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P20710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000185678123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  GSMUA_Achr8P20710_001 56 YSCSFCRREFRSAQALGGHMNVH 78
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
SuperFamilySSF576673.85E-65382No hitNo description
SMARTSM003550.00985678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEQARYWMRM TSGPRLSTQI PGLIVGSACN ESWEEKAFAE DTAGHLGGCV WPPRSYSCSF  60
CRREFRSAQA LGGHMNVHRR DRAKLRESAS LSEEAAEEQR QPQVSPLALG AAANPNPSSG  120
VLASPVSPRV PAPVTTRRIW IEDTLFSPSL SSSTIREDVK EYSLLSTTTP LDLLLVPELK  180
LRAEDLGSKE FGLRRWRDIQ VCDEEANRKK RRRCDHPTPA FFLRASSAEQ QQDRFEVLNP  240
ITVEDLDLEL RLGDAPLKIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135178229superman protein
2l1o_A5e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414332.10.0PREDICTED: uncharacterized protein LOC103995460
TrEMBLM0TS740.0M0TS74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P20710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-27C2H2 family protein