PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P20150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 354aa    MW: 38711.9 Da    PI: 9.321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P20150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12108154147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT+ E+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  GSMUA_Achr8P20150_001 108 RVPWTENEHRMFLMGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 154
                            789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.046103159IPR017930Myb domain
TIGRFAMsTIGR015571.0E-18107157IPR006447Myb domain, plants
SMARTSM007172.4E-9107157IPR001005SANT/Myb domain
SuperFamilySSF466893.16E-15107159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-11108154IPR009057Homeodomain-like
PfamPF002494.1E-10108154IPR001005SANT/Myb domain
CDDcd001671.03E-7110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RGGGVRLFGV RLMEGTGTMK KSASMGCLSS SSASAAFTVA  60
APASGYASDD PARASCSSNC RSERKKGSMA HIIISNGLAP NYETTMERVP WTENEHRMFL  120
MGLQKLGKGD WRGIARNFVV SRTPTQVASH AQKYFIRRSN ASRRKRHSSL FDIVPEMPID  180
EAPNHEEQLL PHSPNELEST SRLPTLHLGL QGPEPAEPST TMHAAQLIES IPRIHNNHPV  240
PMLLPTFYRT FIPVPGPFWP SNQITTAKEE MMRETHKIVM PTPVVPKEPV NADEVVSMSK  300
LSIGEGLPHH MDPSALSLRP SGTSSSSRQS AFHIDSSIAV PDLNQTNSSP IHAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413857.10.0PREDICTED: transcription factor MYB1R1-like isoform X2
TrEMBLM0TS180.0M0TS18_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P20150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-56MYB_related family protein