PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P19850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 334aa    MW: 35854.9 Da    PI: 5.142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P19850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19115163355
                    AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+++AeIrd +     r  r++lg+++taeeAak ++ a+ +l+g
  GSMUA_Achr8P19850_001 115 FRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTYDTAEEAAKVYDSAAIQLRG 163
                            89******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-28114171IPR001471AP2/ERF domain
PROSITE profilePS5103222.866114171IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20114171IPR016177DNA-binding domain
SMARTSM003808.9E-32114177IPR001471AP2/ERF domain
PfamPF008479.1E-12115163IPR001471AP2/ERF domain
CDDcd000181.65E-27115171No hitNo description
PRINTSPR003678.9E-10115126IPR001471AP2/ERF domain
PRINTSPR003678.9E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDAAFLVPMK RTEHVVVTPK PPLASRPKRR PGDVPAAAPR PRTVRIFCDD YDATDSSGDE  60
DECCHSRLRV RRYVQEIRFD ARPARVGATP AAEAGKKRKA GAAAAACGDG SVQTFRGVRR  120
RPWGKYAAEI RDPWRRVRVW LGTYDTAEEA AKVYDSAAIQ LRGPDATTNF ARPPAGAATT  180
THPSPPPPAK KNLSENYLTS VSGGYESAEE SHNLYSPTSV LRGFSSSSSC STSAAKANDT  240
EEKPKPPATG IASSSPVEPG GFLQFEEETL FDGLLSFFDD ESAPVGVLAE DLSAAFIHDS  300
GLDLLEPSST WPAGDDFFAD IGDLFPIEPL PAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-181151701571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413827.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like isoform X1
TrEMBLM0TRY80.0M0TRY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-39cytokinin response factor 4