PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P19810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 350aa    MW: 37414.2 Da    PI: 5.1335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P19810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31160218259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers  dp +++itY+ eHnh+
  GSMUA_Achr8P19810_001 160 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSPADPAMFIITYTAEHNHP 218
                            79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31145220IPR003657WRKY domain
PROSITE profilePS5081133.66154220IPR003657WRKY domain
SuperFamilySSF1182903.01E-26155220IPR003657WRKY domain
SMARTSM007741.4E-37159219IPR003657WRKY domain
PfamPF031061.6E-25161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTDGDWDLGA VVRSCRSSGT TEAAAAARGN FFLQPPSAVP LDVEQQEAAA EGGEGGAFVG  60
WPDLFRSRDG LQELEELYKP FFPKVQQQRP RGSPSCPSPA AVAGPHQPPP SRQSQRPPSQ  120
IPRSKRRGNF DPKIGYWFGD SRKNQQKKVV CHVPTDGISS DVWAWRKYGQ KPIKGSPYPR  180
GYYRCSSSKG CLARKQVERS PADPAMFIIT YTAEHNHPVP THRNTLAGST RHKFSSPASV  240
SASASASARE DGGNPTSSPP SSSTAAGLSP TTPLTASMED RNDGEDEELD EDEGMLLVED  300
MEVMGEQDLL FMGGEEEAGP AAPASSAEVA EFFGGNSGPG DRSFSPAVSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-211612211880Disease resistance protein RRS1
5w3x_D9e-211612211880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413820.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLM0TRY40.0M0TRY4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-50WRKY family protein