PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P18730_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 40185 Da PI: 7.4332 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++q+G g+W+++++ g+ R++k+c++rw +yl GSMUA_Achr8P18730_001 14 KGLWSPEEDEKLIKHITQFGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W++Ia +++ gRt++++k+ w++ GSMUA_Achr8P18730_001 67 RGTFSKQEEDLIIELHAVLGNR-WSKIATHLP-GRTDNEIKNLWNS 110 899*******************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.543 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.715 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGGHSCCYKQ KLRKGLWSPE EDEKLIKHIT QFGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SKQEEDLIIE LHAVLGNRWS KIATHLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLA EVDGGDDKAL DNSEKNSGSG GLQLPNSSTC RSPSPMGSFP LPLLSFGPDY 180 SSSLTTSAAL PFSSNPLLWL NQTARQLDAT PELSCNAISA AVSSLSTSAI APPSCAGDST 240 ISNWHAANCN NNPGSSVNES GGFMLQSSCS FDSGIFPWSE LTPDKVVQVQ LGGETEDLKW 300 SEYLHGAFPA SAAVQAQSSQ PFYGDIKGGS QFTISGLSIW QQNQQLQHQL QAADISGKDF 360 QSVSVGFQQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413698.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | M0TRM6 | 0.0 | M0TRM6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P18730_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 4e-87 | myb domain protein 61 |