PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P11980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23236 Da PI: 5.1392 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g GSMUA_Achr8P11980_001 52 PVYKGVRRRN-GDKWVCEVREP---NKKSRIWLGTFHTAEMAARAHDVAAMALRG 102 68*****877.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-12 | 52 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-27 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-31 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.522 | 53 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 53 | 111 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.34E-27 | 54 | 112 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDSFSSDSLD SPLARRSAGA AASDEEVSYA TVSSAPPKRR AGRTKFRETR HPVYKGVRRR 60 NGDKWVCEVR EPNKKSRIWL GTFHTAEMAA RAHDVAAMAL RGRSACLNFA DSPWRLPVPE 120 SSSPADIRKA AARVAEAFLP RPSSETPEQM QEQMATAWAA ADDAFFVEDG LNFGMQGYLD 180 MAEGLLIDPP PPPMDYEDDS DGIVPLWSYA V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 51 | 109 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411456.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1G | ||||
Swissprot | A2XWL6 | 1e-67 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-67 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | M0TPQ1 | 1e-152 | M0TPQ1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P11980_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-47 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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