PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P07450_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 15580.9 Da PI: 9.2774 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 43 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C++Cg + s k + ++H+ t H GSMUA_Achr8P07450_001 43 YYCQYCGICRSKKNLIRSHMLTnH 66 89******************9988 PP | |||||||
2 | zf-C2H2 | 26.1 | 2.2e-08 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg sF+ + +Lk+H+++H GSMUA_Achr8P07450_001 90 YTCKECGASFRKPAHLKQHMQSH 112 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 21 | 43 | 66 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.67E-8 | 87 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-8 | 88 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.2E-4 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.84 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.9E-6 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MKYMYKCRVM VSAGSCSSGD EMTNNNEGAD AMKKPPKRDI RRYYCQYCGI CRSKKNLIRS 60 HMLTNHKFEL EDAQSDEVEG INKVDRMKRY TCKECGASFR KPAHLKQHMQ SHSVEHWIPC 120 NELQNAKRLH YLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411993.1 | 3e-71 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 3e-23 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | M0TNE8 | 4e-96 | M0TNE8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P07450_001 | 6e-97 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-25 | transcription factor IIIA |