PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P06150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 245aa    MW: 28007.2 Da    PI: 9.612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P06150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.3e-161152344
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                           i n+s r  t+ kRr+g+lKK eELS+LC+++++ ++++++ 
  GSMUA_Achr8P06150_001 11 IVNDSTRRATLKKRRKGLLKKVEELSILCGVDACAVVYAPNE 52
                           7799***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.568151IPR002100Transcription factor, MADS-box
CDDcd002667.20E-17283No hitNo description
SuperFamilySSF554554.19E-22394IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MARSKVRLSW IVNDSTRRAT LKKRRKGLLK KVEELSILCG VDACAVVYAP NEHQPQMWPP  60
PPDTARIIAR FRKLPEIERT RKMINQESFL HQRVSKLVEQ LRRLHRENHE IGITKLMFEG  120
LRGRDFDDLC LEDASALTWM VETKLRMIYE KREEVSKRLA MPPPQPQAAA ALAATATETQ  180
QTPPAQPPAP PQPTGWSNPV NHGQQAVEAV QQPNWVTDVM VNWSQQDSDN LLVDLTTTWP  240
ATLFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412915.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM0TN180.0M0TN18_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P06150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-33AGAMOUS-like 80