PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P01930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 24523.3 Da PI: 8.0935 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 45 | 87 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ GSMUA_Achr8P01930_001 45 PFTPAEDATILAAHDRYGNK-WATIARLLP-GRTDNAIKNHWNST 87 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-6 | 11 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.62E-17 | 13 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 14 | 90 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.503 | 38 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 39 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-14 | 45 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-11 | 45 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVMVEESDKG EQRVKGSWSP EEDAALTRLV ERHGARNCPS VHHRPFTPAE DATILAAHDR 60 YGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRRRATPVAP SPSSSPLPLS SSSPIATEPD 120 YSDSGSARKR QRSSEDANGG GCSSLAADPT TSLSLSLPGD GGGAERRSDG PLGDVERLRD 180 MCLVSIMRQM IAEEVRSYID KLRSPGAVDD TVSVVVKAEP PSDRQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-21 | 14 | 91 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-20 | 14 | 91 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-20 | 14 | 91 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-21 | 14 | 91 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-21 | 14 | 91 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 93 | RRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412621.1 | 1e-138 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-29 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | M0TLU5 | 1e-162 | M0TLU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P01930_001 | 1e-163 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-27 | myb domain protein 73 |
Publications ? help Back to Top | |||
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