PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 570aa    MW: 61738.2 Da    PI: 8.695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29216273260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            dDg++WrKYG K+vkgs++prsYY+Ct+++Cp kk+vers+ d++++ei+Y+g+H h+k
  GSMUA_Achr8P01790_001 216 DDGCHWRKYGEKQVKGSDNPRSYYKCTYPSCPRKKQVERSS-DGQITEIVYKGTHSHSK 273
                            8****************************************.***************85 PP
2WRKY107.85.5e-34372430159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dp+ v++tYeg+Hnh+
  GSMUA_Achr8P01790_001 372 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTMGCPVRKHVERASQDPSSVITTYEGKHNHD 430
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26208274IPR003657WRKY domain
PROSITE profilePS5081121.918210274IPR003657WRKY domain
SuperFamilySSF1182901.31E-23211274IPR003657WRKY domain
SMARTSM007742.8E-30215273IPR003657WRKY domain
PfamPF031061.4E-23216271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-38357432IPR003657WRKY domain
SuperFamilySSF1182909.15E-30364432IPR003657WRKY domain
PROSITE profilePS5081138.09367432IPR003657WRKY domain
SMARTSM007741.0E-39372431IPR003657WRKY domain
PfamPF031069.7E-27373430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSSSTSSSSM ETSAILQPPA FAFSELLAGA GGVDGDGGRD FPAFAGDSVP NFKSAPPPPS  60
LAISRPPLSP SSWFAIPAGL SPALLLDSPV LFSSSNILPS PTTGTLQALN RGISSADHRQ  120
GNKDETIACS DISYQTNTEP QNFETASFQT CGSAIAVEGA FKTHRRCNYH HETSNNIKVE  180
AVAPTFQSEL RAHHGQTDHD RSSQAPLTLE EQRKFDDGCH WRKYGEKQVK GSDNPRSYYK  240
CTYPSCPRKK QVERSSDGQI TEIVYKGTHS HSKPQSTTRH SAAVQAIHDA APPEASEASF  300
GGPDNSSASF GDSIIDLSSR RSNRGGEALD ETEPDAKRWK TEGDHEELSA PGNRATREPR  360
VVVQTQSDVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT MGCPVRKHVE RASQDPSSVI  420
TTYEGKHNHD VPAARGSGAH LQSRPQPEDY GTATAVRPSF MAGHASQIAA YDAFGASGVY  480
VSGYRSSLLC SSRFGCKLPV ILKLKFRSRA CVSGLLARRS KLRRVSPVDR RSPTGETRTR  540
AAPGPASWAQ RVNGSRESGE RDFGYVSLVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36208433878Probable WRKY transcription factor 4
2lex_A2e-36208433878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412635.20.0PREDICTED: probable WRKY transcription factor 26 isoform X3
SwissprotQ6B6R41e-114WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLM0TLT10.0M0TLT1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-93WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]