PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P01410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27395.6 Da PI: 9.3788 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.1 | 1.1e-42 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 ppG+rF Pt+eel+ +yL++k+e++ ++ e ++ +++++++Pw+Lp ++ +e++w+fF++r++++a+g r++r+t+sgyWk GSMUA_Achr8P01410_001 5 PPGYRFYPTEEELIGFYLRNKLEHRGEDVMEQvVPVAHVHRFDPWQLPpIsgePCRRDEEQWFFFCPRQEREAHGGRPTRITASGYWK 92 9***********************9977655538888**********9535654455888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ + v+s+ ++++g k+t+vfy+grap+g+kt+W m+eyr+ GSMUA_Achr8P01410_001 93 ATGSPTLVYSSMNRVMGKKRTMVFYRGRAPNGTKTQWKMNEYRA 136 ******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-46 | 3 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.324 | 4 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSSFPPGYRF YPTEEELIGF YLRNKLEHRG EDVMEQVVPV AHVHRFDPWQ LPPISGEPCR 60 RDEEQWFFFC PRQEREAHGG RPTRITASGY WKATGSPTLV YSSMNRVMGK KRTMVFYRGR 120 APNGTKTQWK MNEYRALEES AASTIHSSAA QKVIITSIMV EFTLCRIHTK SGSSRSFDRR 180 PSEAVAAANT DAQKPVSAKR SLSHDSTSSD GNGSQRALRR RGEDDARLDN DNSELLQDWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-37 | 3 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-37 | 3 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-37 | 3 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-37 | 3 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-37 | 3 | 175 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-37 | 3 | 175 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-37 | 3 | 175 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412675.1 | 1e-173 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 5e-69 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M0TLP3 | 0.0 | M0TLP3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P01410_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-71 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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