PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P00300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28895.7 Da PI: 9.7405 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.4e-11 | 125 | 166 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ e+Aa+++++a+ GSMUA_Achr8P00300_001 125 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEDAARLYDRAAF 166 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.57 | 100 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-8 | 124 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-4 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-5 | 124 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-6 | 127 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKLIKQHLIV TSEQSAMVSI RRRRYLGLCS GKSSFPVVLP RPIENGNAVE SPTQQVKPVS 60 VHPMRLVDTS LQKLVAKSET YPGSSSASGL ITSKEEPNHY YPGKEIKRRK RHRRKHYEDQ 120 EPCIMRGVYF KNMKWQAAIK VDKKQIHLGT VGSQEDAARL YDRAAFMCGR EPNFELTEEE 180 KQELRQYNWE EFLAMTRSAI NNKKHQRKLG ARRRNKSETQ ISNNWEKEDG TPASSMSEDD 240 EEDVDADTSV L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412796.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | M0TLD2 | 0.0 | M0TLD2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P00300_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-46 | ERF family protein |