PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P00050_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 343aa MW: 36310.9 Da PI: 10.1064

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P00050_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.1	1.8e-35	61	126	6	71
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti+WLl+ a+pai+++tgt++ +a GSMUA_Achr8P00050_001 61 SRTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIQWLLEHAEPAIIAATGTGTVPAI 126 69**********************************************************887773 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-29	62	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.474	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MESQTHGEED RRRKTDLGAG GGGGAVPTPA VIPVHRFIVP KPEPMEMLGM RAFQIMRRPA 60 SRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIQWLLEHA EPAIIAATGT 120 GTVPAIATNI GGTLKIPTEA PTSAPPSRTG GGTVIAGYYP VQDPLLPVGG AISISSGLAP 180 TAGGAQGMVP VWALGGGAAA ASVIPPGALW VLPPPSATAG TSSQSQAWTF PQAPQIVNLA 240 TSRPISTDAL FSGGAHGVNV ATTAGGKHEL QLMSASGEPL RVMGCRFLLN TILTLMQVLE 300 ERTKNSCYKL WRKLEDFIRE EKRFNDWIVY SGSICILVKN MLS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MESQTHGEED RRRKTDLGAG GGGGAVPTPA VIPVHRFIVP KPEPMEMLGM RAFQIMRRPA  60
SRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIQWLLEHA EPAIIAATGT  120
GTVPAIATNI GGTLKIPTEA PTSAPPSRTG GGTVIAGYYP VQDPLLPVGG AISISSGLAP  180
TAGGAQGMVP VWALGGGAAA ASVIPPGALW VLPPPSATAG TSSQSQAWTF PQAPQIVNLA  240
TSRPISTDAL FSGGAHGVNV ATTAGGKHEL QLMSASGEPL RVMGCRFLLN TILTLMQVLE  300
ERTKNSCYKL WRKLEDFIRE EKRFNDWIVY SGSICILVKN MLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412824.1	1e-180	PREDICTED: transcription factor PCF2-like
Swissprot	A2YXQ1	1e-57	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-57	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	M0TLA7	0.0	M0TLA7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P00050_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-47	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]