PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P27120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 568aa    MW: 61514.3 Da    PI: 5.4764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P27120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07240260526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  GSMUA_Achr7P27120_001 240 PCPDFRK-GACRRGDMCEYAHG 260
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002049.84E-136134No hitNo description
Gene3DG3DSA:1.25.40.203.8E-156135IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-156135IPR020683Ankyrin repeat-containing domain
SMARTSM002481300939IPR002110Ankyrin repeat
PfamPF127961.8E-852125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0135686IPR002110Ankyrin repeat
PROSITE profilePS5029714.05356131IPR020683Ankyrin repeat-containing domain
SMARTSM002480.3891123IPR002110Ankyrin repeat
PROSITE profilePS5008810.84691126IPR002110Ankyrin repeat
SMARTSM003564.0E-6235261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4238262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582240262IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5240260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4268298IPR000571Zinc finger, CCCH-type
SMARTSM0035643270293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MNVLTVDIDN SSSLLELAAN DDVDALKVAL DRDPSAIEEV GLWYGRRKGF SRMVLEHRTP  60
LMVAATYGSL DVLKLIVSLP SVDVNRVFGP DSTTALHCAA SGGSLQAVDS VKILLAAGAD  120
PTLVDVNGNR PADVIVVPPK VAFAKTDGSP SSDSTSSPPT ARFLDLPPVT VSEKKEYPVD  180
PSLPDIKNSI YATDEFRMFS FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP  240
CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT NCSRRVCFFA HTNDELRPLY  300
MSTGSAVPSP RASSSAMEMA AAMGFMPGSP SSVSAIIRLR SSLSARDMPV NDFSVMSEFD  360
TQQLLSDLCY PHPSPSAGSR SVLTKTLTPS NLDDFFAAEM ASSPSLLSPI NTSVVDPASP  420
MSSRLAILTQ RDKQQRQQSL QSLSSRDLSP ISSTIVGSPI NSSWAKWASP SGTADWGVNC  480
KELGHLRQSS SSEMRGDGEE PDVSWVHSLV KESPPEKVVP TAMAPAGPSD FSAIGAESSI  540
SNDQLDGHDQ AAVLGAWLEQ MQLDQMVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411280.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_009411281.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_009411282.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0TL480.0M0TL48_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P27120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]