PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P25840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 27089.3 Da PI: 7.2207 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.5e-28 | 121 | 179 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+ rKYGqK vkg ++prsYY+ t agCpv+k++er+++dpk+v++tY g+Hnh+ GSMUA_Achr7P25840_001 121 LDDGYRRRKYGQKIVKGDPNPRSYYKRTNAGCPVRKHIERASHDPKAVITTYDGKHNHD 179 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 106 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-23 | 113 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.268 | 116 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-28 | 121 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-21 | 122 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MERSDGLVTG IIYKGHHDHP KPQSSCRLAA GTMLSCHEEE KTDKLSSLMS VEDESTNAPD 60 HTYHQIDPNS ITEGNCIKYL LDLAIPLIRK MEIANNNSAL IGKTDQEPRV VVQTLSQVDI 120 LDDGYRRRKY GQKIVKGDPN PRSYYKRTNA GCPVRKHIER ASHDPKAVIT TYDGKHNHDV 180 PAAKTISHEA SASVSNPISL DLGVGISTSQ SDATNGSQQL LGTDQIHQHH QAQFVGSGKL 240 VIQATPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-34 | 112 | 182 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-34 | 112 | 182 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394385.1 | 1e-101 | PREDICTED: WRKY transcription factor SUSIBA2 | ||||
Refseq | XP_018685023.1 | 1e-105 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
Swissprot | Q6VWJ6 | 5e-69 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | M0TKS0 | 0.0 | M0TKS0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P25840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 3e-58 | WRKY family protein |