PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 727aa    MW: 79831.2 Da    PI: 8.2483
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-24147248199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F
  GSMUA_Achr7P25330_001 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELITKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNRKKLISGDAVLF 233
                            99****************************963.3345679999******************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++ l+++v+r+
  GSMUA_Achr7P25330_001 234 L--RGNDGMLRLGVRRA 248
                            *..34888899999986 PP
2Auxin_resp114.21.2e-37273354182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a+a+s k+vF+++YnPr+s+seF+++++k++k+l++++svGmRfk+ +e++d+  rr +G+++g+sd+dpvrWp+SkWr+L
  GSMUA_Achr7P25330_001 273 VANAVSDKNVFDIYYNPRVSSSEFIIPYRKFVKSLSNSISVGMRFKLLYEGDDATDRRSTGLITGISDMDPVRWPGSKWRCL 354
                            689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-38144250IPR015300DNA-binding pseudobarrel domain
CDDcd100174.13E-21145247No hitNo description
SuperFamilySSF1019363.14E-41145265IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-20147249IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943147249IPR003340B3 DNA binding domain
PfamPF023621.7E-21147248IPR003340B3 DNA binding domain
PfamPF065071.3E-31273354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MCLLPNPAHH VASAVAAEEE ACRAASVCLE LWHACAGPRI WLPKKGSLVV YLPQGHLEHL  60
RDGGGGRGRG GIGGYDVPPH VLCRVVDVKL HADAATDDVY AQLSLVAENE VRLLLVPDFS  120
LKKGEVEQNA EEENDESISK SLIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ  180
QRPSQELITK DLHGTEWRFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGNDGM  240
LRLGVRRAAQ FKNICPVSEH QSGNMNLAAF AVVANAVSDK NVFDIYYNPR VSSSEFIIPY  300
RKFVKSLSNS ISVGMRFKLL YEGDDATDRR STGLITGISD MDPVRWPGSK WRCLLVNWDD  360
VVNANQQTRL SPWEIKPTCS VLSSGSLSTT GCKRAKVTLP SVNMDFPIPN GNQCLDLRES  420
ASFHKVLQGQ EFSRFRIPSS VGVLASHVSE VEKCQHSEGF SKSLGLHKVF QGQEVFSNHP  480
PILGAHSDAD ARNGVYGLFD GLHTFHAVSR LSTASLGYGT IVQPSSPSIQ ASSPSSVLMF  540
QEASSKTSMV QPVPCRNGQD GGDGGSCFAN LTGMEALHRK EATLPIWPPI MGFHFANQQH  600
KMIEVHAPIL DNKLDTQNDQ NVSRNGCRLF GFSLTEKIPV ADSVGKPLPV SSTSTQVKLD  660
AAFSTSVAQT PAKPVGCSCN GIKIWTLLPF NFFDLLMVCV MFCYLKCHIF QCHKTIPTNA  720
KSALRMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1082638418361Auxin response factor 1
4ldy_B1e-1082638418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9504451e-35AM950445.1 Musa balbisiana microsatellite DNA, clone Af203ZD11FM1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410939.10.0PREDICTED: auxin response factor 3-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLM0TKL90.0M0TKL9_MUSAM; Auxin response factor
STRINGGSMUA_Achr7P25330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-161ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]