PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 319aa    MW: 34197.9 Da    PI: 5.0967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18210244135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr7P25000_001 210 CLHCQTDKTPQWRTGPLGPKTLCNACGVRYKSGRL 244
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.255204240IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-16204254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-15205241IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.71E-15206267No hitNo description
CDDcd002021.50E-14209256No hitNo description
PfamPF003203.6E-16210244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
METPEYFHGG FYRGGNPQCG PEKKAGGCGG GGEDQFSLED LLDFSNEEED ETGGTLAAAG  60
NSTDSSTVTA VDSCSNSFSG LEPHFSNDLV CRSLADASRS GDLCEPYEEL AELEWLSNFV  120
EESFSSEDLH KLHPISGVAA GGRVNHVAPF RPEAIVPGKA RSKRSRAAPC SWSSRLLVLS  180
PSLATASSPE SELIDLTAGT AVAAGDGRKC LHCQTDKTPQ WRTGPLGPKT LCNACGVRYK  240
SGRLVPEYRP AASPTFVVSK HSNSHRKVLE LRRQKELQQQ QLFHAGGVAS FYDGPMPVAA  300
AADDDDDFLI HGPDFRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410894.10.0PREDICTED: GATA transcription factor 9-like isoform X2
SwissprotO826323e-77GATA9_ARATH; GATA transcription factor 9
TrEMBLM0TKI60.0M0TKI6_MUSAM; GATA transcription factor
STRINGGSMUA_Achr7P25000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-65GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]