PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr7P24410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 91aa MW: 9775.4 Da PI: 8.4191 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.6 | 2.3e-14 | 3 | 27 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYPr+A++V+Ca+C+tV GSMUA_Achr7P24410_001 3 CGGCRQLLSYPRNASYVQCASCQTV 27 ************************9 PP | |||||||
2 | zf-LSD1 | 38.4 | 2e-12 | 41 | 63 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg C +lL+YP+GApsVRC++C GSMUA_Achr7P24410_001 41 CGRCSVLLMYPYGAPSVRCSSCC 63 **********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.5E-15 | 1 | 30 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.4E-12 | 3 | 27 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-8 | 39 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-11 | 41 | 65 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 91 aa Download sequence Send to blast |
MVCGGCRQLL SYPRNASYVQ CASCQTVNLV LEAHQVGNVK CGRCSVLLMY PYGAPSVRCS 60 SCCFITKIGE HNVRPPLSVQ QGQPPTGNPV C |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410823.1 | 5e-62 | PREDICTED: regulator of G-protein signaling 3 | ||||
Swissprot | O65426 | 2e-34 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | M0TKC7 | 8e-59 | M0TKC7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P24410_001 | 1e-59 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13395 | 25 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 9e-37 | lsd one like 2 |