PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P23010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 303aa MW: 31875.9 Da PI: 10.5075 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.5 | 9.7e-38 | 53 | 125 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasece 74 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+p+i+++tgt++++as+ GSMUA_Achr7P23010_001 53 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPSIIAATGTGTIPASALA 125 789*****************************************************************97772 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-30 | 58 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.319 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDPKGSSKLH QEGLPQSDKR EPITSSSAAA AAAESRDLLL SAAAKDEQRR QLAPKRSSNK 60 DRHTKVDGRG RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLHQAEPSI IAATGTGTIP 120 ASALAAAAAA ASMPGWAVTG AANLGCSHPG LWPPLVGGFN SGFLHATATV PSSSNLSAGG 180 GDSVSSFMQR IGLHGFELTG GNPGAVSFAS MLSGHGQQLP GLELGLSQEG HIGALNPQAL 240 GQFYLQMGQG RGGVGAGGKI TSNVNYRINF TNASSIFFLW SQHVQKYQMH NKQWNHQGRC 300 RVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684860.1 | 1e-158 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 4e-63 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0TJY7 | 0.0 | M0TJY7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P23010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-60 | TCP family protein |