PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P22480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 266aa    MW: 29830.9 Da    PI: 9.7242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P22480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.77.1e-47141381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yLk+kv   +l++  vi+e+++ k++PwdLp    +++ e yfFs r+ +y++g+r+n at sgyWkatgk
  GSMUA_Achr7P22480_001  14 LPPGFRFHPTDEELVVQYLKRKVLCCPLPA-AVIPEINLSKYDPWDLP---GEGDGERYFFSLREATYPKGSRSNGATLSGYWKATGK 97 
                            79***************************9.89***************...457789******************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++v+++ ++elvg+kk+Lvf++g+ p+g++t+W+mhey+ 
  GSMUA_Achr7P22480_001  98 DRPVVASgSNELVGMKKVLVFHRGKPPHGSRTEWIMHEYHC 138
                            *****9967778***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-539175IPR003441NAC domain
PROSITE profilePS5100552.67114175IPR003441NAC domain
PfamPF023651.0E-2415137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MERPSFIKHG VLRLPPGFRF HPTDEELVVQ YLKRKVLCCP LPAAVIPEIN LSKYDPWDLP  60
GEGDGERYFF SLREATYPKG SRSNGATLSG YWKATGKDRP VVASGSNELV GMKKVLVFHR  120
GKPPHGSRTE WIMHEYHCLA ACETRGFSFA QRKKFVHSCM RQTKNDWVVC RILKKRAKML  180
EAGNTSRSYN DGRVRIDHVE FLDVQRSSSS SSSSSSSSCV TDLSSEEGEE GSSNGVNASP  240
PCGKRLIHSP SLCSPNTHRE RKGKWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441217715167NO APICAL MERISTEM PROTEIN
1ut4_B1e-441217715167NO APICAL MERISTEM PROTEIN
1ut7_A1e-441217715167NO APICAL MERISTEM PROTEIN
1ut7_B1e-441217715167NO APICAL MERISTEM PROTEIN
4dul_A1e-441217715167NAC domain-containing protein 19
4dul_B1e-441217715167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178LKKRAKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410565.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY934e-69NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM0TJT40.0M0TJT4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P22480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-70NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]