PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P21670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 289aa    MW: 32110 Da    PI: 8.1689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P21670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
  GSMUA_Achr7P21670_001 14 RGPWTQEEDTVLVSYIQKHGPGNWRSVPANTGLMRCSKSCRLRWTNYL 61
                           89********************************************97 PP
2Myb_DNA-binding46.11.1e-1467112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+ E+ l+v++  +lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr7P21670_001  67 RGNFTKSEEGLIVHLQSLLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.889965IPR017930Myb domain
SuperFamilySSF466892.5E-3011108IPR009057Homeodomain-like
SMARTSM007177.9E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001677.06E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.39566116IPR017930Myb domain
SMARTSM007173.7E-1366114IPR001005SANT/Myb domain
PfamPF002492.4E-1367112IPR001005SANT/Myb domain
CDDcd001673.30E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSQCCDKV GIKRGPWTQE EDTVLVSYIQ KHGPGNWRSV PANTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TKSEEGLIVH LQSLLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKIEKHQ  120
LATTGCTTSS DSNNGCPEIM TSRCHNNNAS GNSCHSNLPS SDLSSSSYAS STHNISRLLQ  180
GWTRCSPKVK PTAPDQDLTC HGIQMKVDQE SCHPLFNEEL KQLLPAWEEP SAEASFYGSQ  240
STPACADGKK RFDAQNPPLA ALENWLLDEA ARQVDLSVGY IDSISHAFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-26141164105C-Myb DNA-Binding Domain
1msf_C4e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410469.20.0PREDICTED: transcription factor MYB30-like isoform X1
SwissprotB3VTV77e-92MYB60_VITVI; Transcription factor MYB60
TrEMBLM0TJK30.0M0TJK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P21670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-80myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]