PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 264aa    MW: 30212.5 Da    PI: 8.0646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-141461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++ Ed++l d+++ +G g+W ++++  g+ R++ +c++rw++yl
  GSMUA_Achr7P18550_001 14 KGSWSAIEDKILTDYIRAHGEGRWGKVPKGAGLSRCARSCRLRWLNYL 61
                           799*******************************************97 PP
2Myb_DNA-binding51.32.6e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr7P18550_001  67 RGNISHEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112
                            78999*****************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129412.149961IPR017930Myb domain
SuperFamilySSF466892.3E-2712108IPR009057Homeodomain-like
SMARTSM007177.8E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
CDDcd001676.20E-91661No hitNo description
PROSITE profilePS5129425.78462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2565116IPR009057Homeodomain-like
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002497.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRRNPCSSKE GFNKGSWSAI EDKILTDYIR AHGEGRWGKV PKGAGLSRCA RSCRLRWLNY  60
LRPDIKRGNI SHEEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT VLKKKVQGQS  120
VDMHSGEDEH MNGKSQETTR CPKFGNSTGR NDPPSFPQHG KNKFGESLVD GDFFSETSFL  180
APEDCDLFNP LMDSNHEELC PRHFLDLNFF EIFESNLPKE HETLKCCVKM SASLLCTFVL  240
LKENLLLFVL TCSGCMFLKL IIRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410062.11e-166PREDICTED: transcription factor MYB3 isoform X1
TrEMBLM0TIP20.0M0TIP2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-57myb domain protein 3