PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P18230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WOX | ||||||||
Protein Properties | Length: 193aa MW: 22052.2 Da PI: 9.1217 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.7 | 3.1e-21 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Leel+++ r+p+a+++++++++l +++ ++V++WFqN++a+e++ GSMUA_Achr7P18230_001 6 STRWCPTPEQLMILEELYRSgVRTPDASQIQQITAHLsrygRIEGKNVFYWFQNHKARERQ 66 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 122.6 | 1.5e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLeely+sG+rtP +++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk GSMUA_Achr7P18230_001 5 PSTRWCPTPEQLMILEELYRSGVRTPDASQIQQITAHLSRYGRIEGKNVFYWFQNHKARERQK 67 589***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.301 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-5 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.43E-5 | 5 | 67 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-12 | 5 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.0E-19 | 6 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-8 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MPQAPSTRWC PTPEQLMILE ELYRSGVRTP DASQIQQITA HLSRYGRIEG KNVFYWFQNH 60 KARERQKLRR RLSIHHHLLC SGYPLALFPR RQLHCFQDAP LLHHHIPTSH FPHQDADATQ 120 GLDLLCKLET KGDQVTALTN STLNGHEWLA KMDIHSTNPP CCKPLKTLDL FPTKSTGLKD 180 ECTTSKSRSA SPS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ862497 | 2e-74 | JQ862497.1 Heliconia orthotricha microsatellite HoB5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684347.1 | 1e-140 | PREDICTED: WUSCHEL-related homeobox 3B-like | ||||
TrEMBL | M0TIL0 | 1e-142 | M0TIL0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P18230_001 | 1e-142 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-37 | WOX family protein |