PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P15500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 196aa    MW: 21539.4 Da    PI: 6.7695
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P15500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.5e-42321311100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++kll++lp ++r da+ss+vyeA+ar+rdPvyG++g i++lq+q++
  GSMUA_Achr7P15500_001  32 PCAACKILRRRCADKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQELPASQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQVS 119
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+a+la++++e
  GSMUA_Achr7P15500_001 120 ELQAQLARAHAE 131
                            ********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.75631132IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4232129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDSSDTTTGF HHLSSSPTSS PVSSPPAAIH SPCAACKILR RRCADKCVLA PYFPPTEPLK  60
FTTAHRVFGA SNIIKLLQEL PASQRADAVS SMVYEANARI RDPVYGCAGA IFQLQKQVSE  120
LQAQLARAHA ELINLQAQQK NLIAMICMEM AQTQQGYRTT PQSTNALADS PNMYQNDAYF  180
LDEISHGSVW DEPLWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-443113410113LOB family transfactor Ramosa2.1
5ly0_B1e-443113410113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409552.11e-146PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK081e-69LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM0THT71e-145M0THT7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P15500_0011e-146(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.18e-72LOB domain-containing protein 11