PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P11950_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 22880.3 Da PI: 8.7394 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F ++ L H++ H GSMUA_Achr7P11950_001 61 YECQYCYREFANSQALGGHQNAH 83 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.63E-6 | 58 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 59 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-5 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.676 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSGVKSTSKK SSSSSGLKLF GFHVSEEEET GLRSDSSSSS TTTTVTATSP GGGDCADGRK 60 YECQYCYREF ANSQALGGHQ NAHKKERQQL KRAQMMLQQQ HDHLGGCFWP PTFVLPLRRN 120 PGSAGWEYFS RAAPTFHASR ACAFPFSSAL RSQPVHPSAF LYSAAGSGPR ISEESANSFG 180 RFPVTAPVAA DADSAKSGDS FGLDLQLRLA PTGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366609 | 1e-35 | AK366609.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044N04. | |||
GenBank | AK374770 | 1e-35 | AK374770.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075P23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409648.1 | 1e-157 | PREDICTED: zinc finger protein 6-like | ||||
TrEMBL | M0TGT3 | 1e-155 | M0TGT3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P11950_001 | 1e-156 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7951 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 2e-12 | zinc finger protein 8 |