PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P11320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1286aa    MW: 146069 Da    PI: 4.9513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P11320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-17449147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W +eEde+l+++v+++G+++W++ a++++ gR++k+c++rw++ 
  GSMUA_Achr7P11320_001  4 RGHWRPEEDEKLKELVTRYGPHSWNALAEKLQ-GRSGKSCRLRWFNQ 49
                           899*****************************.***********996 PP
2Myb_DNA-binding52.71e-165699146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           r ++T+eE+e+l+  ++ +G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr7P11320_001 56 RSPFTEEEEERLLASHRVHGNR-WAAIARLFP-GRTDNAVKNHWHV 99
                           789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.448150IPR017930Myb domain
SMARTSM007179.8E-14352IPR001005SANT/Myb domain
PfamPF002499.5E-16449IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-27497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-25557IPR009057Homeodomain-like
CDDcd001671.45E-11748No hitNo description
PROSITE profilePS5129425.20351105IPR017930Myb domain
SMARTSM007173.4E-1555103IPR001005SANT/Myb domain
PfamPF002491.2E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2058103IPR009057Homeodomain-like
CDDcd001677.69E-115898No hitNo description
Gene3DG3DSA:3.30.200.201.4E-239621056No hitNo description
SuperFamilySSF561121.62E-779651279IPR011009Protein kinase-like domain
PfamPF000698.5E-519751277IPR000719Protein kinase domain
SMARTSM002204.4E-719751277IPR000719Protein kinase domain
CDDcd141332.81E-1489751277No hitNo description
PROSITE profilePS5001136.169751277IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.1E-6310601279No hitNo description
PROSITE patternPS00108011011113IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1286 aa     Download sequence    Send to blast
MCSRGHWRPE EDEKLKELVT RYGPHSWNAL AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLLAS HRVHGNRWAA IARLFPGRTD NAVKNHWHVI MARRHRENSR PFSKTASRSE  120
SRNINQKPIP KDQYSSKIHG KECSIQFHDF LERRCRSVVL ALVASILVDL GDEMTDSVDV  180
VLQFLRKNRF MHAEAALRAE LNARPDLNGF LQKHLAEEKE ALGEHVGTAS GMTQKGMSVY  240
SGEMENEFIV KEIEVGGAGN GSKRKKNSTY NWGPESHPVD PHTWNYSSAG STVNCVVNNS  300
STRDITNNFA DLLISKEPKH QHDSSMSEKR DLTVGTKSDL SGEQNRVSDR RGKVKDEVEV  360
NPEINQIVDH KDDNAFSEDH FIDKLWLQSE NLSTDCSVKT VFPFPAHNTT SSFEGHLDYR  420
KGLRKKAESD DFKEATREQP DGMSWSHFSG ESRENLKMKE SRILDLSFIG ENHKEELPKL  480
RPVRLKSEDK SINMDIEEKA GHHEPGIRLS KAEKTFTFGS LVDVPIGQEF NSSGGKQTIG  540
SSWLSVSQGI SEDTSDFVSG FATIGDESID YPNEYWDSDE YDDDDDDDDV GYMRQPIEDE  600
TWFLAHEIDY PSDNEKHCHD NVPTWQDHTL RKDEDDDQSF AEEEFHLSSE QYLQPKNVEK  660
TAAAQGTIGH KMLYRRIEEN DLLAQYDGQL MDVEELSLMR AEPVWQGFVT QNSDLIMLGN  720
GKFSNEIEQC RTDPFMEDDQ HGSFRSIGVG INSDAADIGS EVHESLVGGS SEGEYFLDYD  780
DRMNPGSYIL PSDKTVYLSG VGFQDSGFSF LPPSITSDLI KDDSCKPLWS SNGNNVVGIL  840
DGCRDGMVTE GMLGTWRRKS SDSSPIQSSR DDKTSDGVRS RKSSASASKD DFAEAEVVNR  900
GVNYITGEAG EEDVETTLED EEAVVLQDQV KQIKAQEEEF ETFDLKIIVF VGNETGFEED  960
KSFQVVLNSV IAGRYHVTEY LGSAAFSKAI QAHDLHTGMD VCVKIIKNNK DFFDQSLDEI  1020
KLLKFINKHD PADSYHILRL YDYFYYREHL LIVCELLKAN LYEFHKFNRE SGGEVYFTMP  1080
RLQSITIQCL EALQFLHGLG LIHCDLKPEN ILIKSYSRCE VKVIDLGSSC FETDHLCSYV  1140
QSRSYRAPEV ILGLPYDKKI DIWSLGCILA ELCTGNVLFQ NDSPATLLAQ IMGIIGPIDQ  1200
DMLAKGCDTY KYFTKNHMLY ERNQETNRLE YLIPKKTSLR HRLPMGDQGF IYFVAHLLEV  1260
NPKKRPSASQ ALKHPWLSYP YEPISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxc_A1e-5591612778391Dual specificity tyrosine-phosphorylation-regulated kinase 2
5lxc_B1e-5591612778391Dual specificity tyrosine-phosphorylation-regulated kinase 2
5lxd_A1e-5591612778391Dual specificity tyrosine-phosphorylation-regulated kinase 2
5lxd_B1e-5591612778391Dual specificity tyrosine-phosphorylation-regulated kinase 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409109.10.0PREDICTED: uncharacterized protein LOC103991393 isoform X1
TrEMBLM0TGM00.0M0TGM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P11320_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-63myb domain protein 52