PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P11040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 426aa    MW: 46445.6 Da    PI: 5.5773
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P11040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.9e-28159213156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++
  GSMUA_Achr7P11040_001 159 KSKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 213
                            6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.657156215IPR017930Myb domain
SuperFamilySSF466891.04E-18157216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-27157216IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-27159213IPR006447Myb domain, plants
PfamPF002491.8E-7162211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLAVESLRGS NGDDRDGTLG NFPVSDDFGD EALLEDIDFG DLFMGIDDGD VLPDLELDPA  60
EIFAAFSVGE EGSGKATAVE EPEGAFGGDG STQDVVVFEA EIGEEEKDVK RQREEVVGAT  120
TTEDSMVMPS GLRSDSPDGN KGRKPSSPSA TRGSHGKRKS KVDWTPELHR RFVQAVEQLG  180
IDKAVPSRIL ELMGIDCLTR HNIASHLQKY RSHRKHLLAR EAEAASWTRR RQMYPKKDVN  240
PWLAPTIGFP PPPPPPAVRP FRPLHVWGHP TAEAPLVHMW LRRPVPQPPS LPWAPQPPLP  300
PPPDPSYWHH LYQRGGREGW VPHAMTQGTP CFPQPLPAAR FPAPPPVPGI VPQPMYRPIP  360
PPVTDHSSSQ LQLDAHPSTE SIDAAIGDVL AKPWLPLPLG LKSPSVDGVL VELQKQGVPK  420
VPPACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16156211257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409086.10.0PREDICTED: probable transcription factor GLK1
SwissprotQ5Z5I41e-92GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLM0TGJ20.0M0TGJ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P11040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-64GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]