PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P08750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 354aa    MW: 39105.8 Da    PI: 7.6671
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P08750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41143219177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC+adls ak+yhrrhkvCe+hska+vv+++gl+qrfCqqCsrfh+l efDe+krsCr+rLa+hn+rrrk+q
  GSMUA_Achr7P08750_001 143 RCQAEGCKADLSGAKHYHRRHKVCEFHSKATVVIAHGLQQRFCQQCSRFHALAEFDEAKRSCRKRLADHNRRRRKPQ 219
                            6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-35138205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.718141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-39142221IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMNRSNSAEA FVPSMVSFAG LEGNNQKRHL WDWATASHNL NAAVPTTNHE AIDLQSRPIF  60
PPAPALDCPP PLFPMNHFAF CPPPPVPDFP VALIKTEDGI DSGGRIGLNL GQRTYFSSGD  120
GLEMDHLFAR SRGVYSLSHQ PPRCQAEGCK ADLSGAKHYH RRHKVCEFHS KATVVIAHGL  180
QQRFCQQCSR FHALAEFDEA KRSCRKRLAD HNRRRRKPQL ATGIAESSAS VIPTANSNIE  240
KTKQAQDISN DLKNEPALSI RGVGADERRG MDSNTMYQSQ GTLGAMLEDK FPQQQHIFSL  300
SESSGTFFHH HNPPLSSDSN EATQSTGGCS SHSTHLQQAN LLHLGQAMFE LDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-301442171184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200217KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408821.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLM0TFW50.0M0TFW5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P08750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-51squamosa promoter binding protein-like 8