PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P08720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 163aa MW: 18169.3 Da PI: 9.2423 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.2e-16 | 28 | 65 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp+++rgpdg++tLCnaCGl ++ kg++ GSMUA_Achr7P08720_001 28 CHHCGISAksTPMMHRGPDGPRTLCNACGLVWANKGTM 65 *****77777*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-12 | 22 | 75 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.14E-11 | 27 | 73 | No hit | No description |
CDD | cd00202 | 1.97E-13 | 27 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 27 | 68 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.9E-14 | 28 | 65 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 28 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGGAATSDAN QNWCISVHQI FIVSIFQCHH CGISAKSTPM MHRGPDGPRT LCNACGLVWA 60 NKGTMRDLAK NPSPAIPNAL PAQKEGGLNK VMYHSHPTMW LNVEKYIYIL TSKVPLTRKR 120 RFRHIKGQCD MCRSVEILHC FHVSLLCQSY CLWAILAASS IAF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384454.1 | 9e-37 | PREDICTED: GATA transcription factor 20 | ||||
Swissprot | Q8GXL7 | 6e-25 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | M0TFW2 | 1e-119 | M0TFW2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P08720_001 | 1e-120 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 3e-27 | ZIM-like 1 |
Publications ? help Back to Top | |||
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