PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P06880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 27908.5 Da PI: 8.3738 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.5e-14 | 123 | 167 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r++ + Rt+ q+ s+ qky GSMUA_Achr7P06880_001 123 PWTEEEHRTFLAGLEKLGKGDWRGISREFVTSRTPTQVASHAQKY 167 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.938 | 116 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-17 | 117 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-18 | 119 | 171 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-10 | 120 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 123 | 167 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.33E-10 | 123 | 168 | No hit | No description |
Pfam | PF00249 | 2.7E-11 | 123 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEVHEGAPIL YTSQASMLRG VGKEMSQASC FKASTMEAVV EEHKREKVVT LFGVRILGTA 60 EGEEEEVMRK CWSMGCLASC TVASPCAAPG TGGSSQAYVS DSGLDQSLKR GSRRGQERKR 120 GIPWTEEEHR TFLAGLEKLG KGDWRGISRE FVTSRTPTQV ASHAQKYFLR KNNPGKRKRR 180 SSLFDVVTSD RVGISGSSTV GDDPDLLGVS SSYSSCQPLS SDAPLSDEPS DLELRISLPA 240 PHSLTKLATQ GAAGAIRVI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407831.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | M0TFC8 | 0.0 | M0TFC8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P06880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-41 | MYB_related family protein |