PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 488aa    MW: 53291.5 Da    PI: 6.5662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09284331455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GSMUA_Achr7P02770_001 284 SHSLAERVRREKISQRMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 331
                            8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16278348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-11278335No hitNo description
PROSITE profilePS5088815.542280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16280347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6284331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNSGSSDRSP KCFLNQNWDR SVDHISQFGS ALGSFMSPQS SFELERGLQR IGHLSEEVPP  60
QSHFMDSSGN SQALGGLVIA GNLALAHLDQ FPADPGFAER AARFSSFDGQ SYGWFSGHFE  120
LPGSGKPSTA AIIQSLTASG LQIGHLESNR QIPVSNGLQL KMNSAGPAIS REEMSLSDPI  180
SASNGKKRKA PSKSKEKDAA SPKPSTDPPK VADEEDSDTK RCRSSGKIHE IGIDNVKPKL  240
EQNDGARSNG NAEQKQRKAG NDKPSEPPKD YIHVRARRGQ ATDSHSLAER VRREKISQRM  300
KLLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF DNLANLRAKD  360
MIQIGGPVPN SAYSPEMSMV SSYADVPQQK DILHSIATNG MDFHCSMNLL DSTGHQDLNA  420
HQACLGGFGD SSSQLGFFWE DDLQNIVQMG IGQDQEIVAS SHNFHGGWKS RFNNCILILP  480
FIQLDDSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408340.10.0PREDICTED: transcription factor bHLH77
TrEMBLM0TE670.0M0TE67_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-65bHLH family protein