PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P02680_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 294aa MW: 31021.7 Da PI: 9.0164

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P02680_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.9	7.1e-38	72	143	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+p+i+++tgt++++a ++ GSMUA_Achr7P02680_001 72 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPSIIAATGTGTIPAAAA 143 7899************************************************************99999444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.6E-31	77	145	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.992	78	132	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDRKSCAKLP RDVPKFQQTL CLPQGDKKEP TTAADSVASA ERRDLLPSAA LGGRELQVAA 60 AREKDEQRRQ LAPRRSSNKD RHTKVDGRGR RIRMPALCAA RIFQLTRELG HKSDGETVQW 120 LLQQAEPSII AATGTGTIPA AAAAVQPNWA AVGAAGLPRS HPGLWPTPVC GFDSGFMRPS 180 AAASSSSNNV GAGGGDASIG SFVQRTGLHG LELAGSNLSA MSFASMLGGH GQQLPGLELG 240 LSQDGRIGVW NLEAMGQIYQ QMEPGRLVAG ANGAGQWQQQ QTHQSDDSSQ GSEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408353.1	0.0	PREDICTED: transcription factor TCP20-like
TrEMBL	M0TE58	0.0	M0TE58_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P02680_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-35	TCP family protein