PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28487.7 Da    PI: 9.5928
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+iifs++gklyeys+
  GSMUA_Achr7P00460_001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIIFSTKGKLYEYST 59
                           79***********************************************96 PP
2K-box100.13.1e-33811747100
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                            +s + + + +++qe++kLk+++e L ++qR l+Ge+L+sL+lkeLqqLe+qLe+slk iRs+Kn++l ++i el +kek lqeenk+L
  GSMUA_Achr7P00460_001  81 VSSDLESQGNWCQEYSKLKAKVEVLSKSQRYLMGEQLDSLNLKELQQLENQLENSLKLIRSRKNQVLSDSIAELERKEKTLQEENKNL 168
                            555556679******************************************************************************* PP

                  K-box  95 rkklee 100
                            +k+++e
  GSMUA_Achr7P00460_001 169 EKQIME 174
                            ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-34290IPR002100Transcription factor, MADS-box
CDDcd002651.30E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-3087172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.46288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIIFST KGKLYEYSTD  60
ASMEKILERY EQYSYAEKAL VSSDLESQGN WCQEYSKLKA KVEVLSKSQR YLMGEQLDSL  120
NLKELQQLEN QLENSLKLIR SRKNQVLSDS IAELERKEKT LQEENKNLEK QIMEKQKAKV  180
LTQNARWEQA QTKSLSPLLL ITDAPPLPPP NIGCYQGRAA VGAEEAAAQQ PQVRISNSLL  240
PPWMLSHLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23185184MEF2C
5f28_B7e-23185184MEF2C
5f28_C7e-23185184MEF2C
5f28_D7e-23185184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408635.10.0PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ10CQ13e-98MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLM0TDI60.0M0TDI6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-73AGAMOUS-like 8
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]