PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P36470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 380aa MW: 40906.5 Da PI: 8.6893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P36470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.4	2.2e-37	106	236	5	124
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg 88 + +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a ++ ++ s ++s+s+ s++ GSMUA_Achr6P36470_001 106 RNSNKDRHTKVEGRGRRIRVPALCAARIFQLTRELGHKTDGETVEWLLQQAEPAVIAATGTGTIPAAAAftslSTISLRNSGSSVSAS 193 5789*********************************************************999994444444444555554433333 PP TCP 89 ..........kaaksaakskksqksaasalnlakesrakararare 124 + ++++ +s +++s++ +ln++ s+ r r+ e GSMUA_Achr6P36470_001 194 phllaanyfnSDRSFSFSSDGQSTSTSVFLNVNPCSK---RGREPE 236 6777777775333444355555555555566655333...333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-33	108	211	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.994	109	163	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MQWLISSRNI SFDLSLSSPA DPSPHSLSSF LPNSITTVCT SWHNPGMEGE SRGYRRPNDA 60 LGFFEKKQED HSCSAYPSPA ISSTTTTAAG EPVVNPQNKP PPKKIRNSNK DRHTKVEGRG 120 RRIRVPALCA ARIFQLTREL GHKTDGETVE WLLQQAEPAV IAATGTGTIP AAAAFTSLST 180 ISLRNSGSSV SASPHLLAAN YFNSDRSFSF SSDGQSTSTS VFLNVNPCSK RGREPEIRQH 240 RPHPLQNQIA VHGQASHGRM PGTLWPVTNP NTQDTMGGDD RSTWTLPDQL GSSNILRVSA 300 SSGLHSLNLC TSMAMLPSQQ LDLCWGGDGG TPASLDGYRS LSTAERMPSP TRQAHGDGLC 360 GGTSGNLAKQ LIQEYNNKNM

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MQWLISSRNI SFDLSLSSPA DPSPHSLSSF LPNSITTVCT SWHNPGMEGE SRGYRRPNDA  60
LGFFEKKQED HSCSAYPSPA ISSTTTTAAG EPVVNPQNKP PPKKIRNSNK DRHTKVEGRG  120
RRIRVPALCA ARIFQLTREL GHKTDGETVE WLLQQAEPAV IAATGTGTIP AAAAFTSLST  180
ISLRNSGSSV SASPHLLAAN YFNSDRSFSF SSDGQSTSTS VFLNVNPCSK RGREPEIRQH  240
RPHPLQNQIA VHGQASHGRM PGTLWPVTNP NTQDTMGGDD RSTWTLPDQL GSSNILRVSA  300
SSGLHSLNLC TSMAMLPSQQ LDLCWGGDGG TPASLDGYRS LSTAERMPSP TRQAHGDGLC  360
GGTSGNLAKQ LIQEYNNKNM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407203.2	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	M0TD89	0.0	M0TD89_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P36470_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-28	TCP family protein