PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 535aa    MW: 56482.6 Da    PI: 7.167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08259279526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C+ f++ G C+ Gd C +aHg
  GSMUA_Achr6P32910_001 259 PCPEFRK-GSCRNGDACEYAHG 279
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.0E-1234167IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-972163IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-772139IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.63975140IPR020683Ankyrin repeat-containing domain
SMARTSM0024842075105IPR002110Ankyrin repeat
CDDcd002042.90E-477167No hitNo description
PROSITE profilePS500888.523110140IPR002110Ankyrin repeat
SMARTSM002480.21110142IPR002110Ankyrin repeat
PROSITE profilePS5010313.45254281IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6254280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5258280IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5259279IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972289313IPR000571Zinc finger, CCCH-type
SMARTSM0035621289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MCTGLMKSSP PTKPGAVGGG DVKQPAASEA AALLLELAAS DDLAAFKRAV EEDGHSVDAA  60
ALWYGRSSGR GMGYQQRTPL MIAALYGSTA VIGYILAGHT AEAARRAASD GATALHCAAA  120
GGSAASLETV NLLIGASAEV VDALDASGNR PGDVIARQSS STVAKSLEVI LKAPVCPRVS  180
SPAKEEPAKQ GEKKEYPPDL TLPDIKTGIY GTDEFRMYTF KVKPCSRAYS HDWTECPFVH  240
PGENARRRDP RKYSYSCVPC PEFRKGSCRN GDACEYAHGV FESWLHPAQY RTRLCKDETG  300
CNRRVCFFAH KPEELRTVNP SVASVNGMAS SSPRSSSPGL SSLDMATALM LMQQPGSPIS  360
RLKASLSARD LDFDLDLLGL EGLAASRISE YSDLLGSAIM NSRASAFAKR SQSFCDRGAT  420
AGRQSTLSAM TTAAVAAPSL LSDWGSPDGK LDWGVQGEEL NKLRKSASFA FRGAAPATAP  480
TGMNEPDLSW VHSLVKDGPA APPVGRLGAG EQQSGYQLSS GGDLFSPWSE EKIMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406924.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
SwissprotQ9LUZ41e-153C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM0TC850.0M0TC85_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-107C3H family protein