PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 411aa    MW: 45909.6 Da    PI: 7.6399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18158208155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta++Aa a++ a+++++g
  GSMUA_Achr6P32780_001 158 CRYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAFQAALAYDDAARAMYG 208
                            78*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-13158208IPR001471AP2/ERF domain
CDDcd000181.91E-27158217No hitNo description
PROSITE profilePS5103221.443159216IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-19159217IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-30159217IPR001471AP2/ERF domain
SMARTSM003801.1E-32159222IPR001471AP2/ERF domain
PRINTSPR003673.0E-9160171IPR001471AP2/ERF domain
PRINTSPR003673.0E-9182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MKVYVYGQIH NPSLRDQAIG HAIAERSSDT CQTRRLSFRH VLSHVTRLLL YKDLGTAFGI  60
SWRPRNIWKP RRKRSRALNQ EEARQMGVMT MVESDRRSRV RRGRNGSSSV AETIAWWRER  120
NRQLKCSVDT EKRVRRPPAK GSKKGCMRGK GGPENPNCRY RGVRQRTWGK WVAEIREPNR  180
GSRLWLGTFP TAFQAALAYD DAARAMYGTM ARLNLPAMTR GLCGSTSTSY NSEDVDASVS  240
CDFGIKTPRV DAGSETVDAP RTWADNIKHP KIELKEDVAS DMWPSSAADA PETQSTEASV  300
DLLLCQSPRE DEFSVEEMLR MMGTDTDNGA PDQFGAVAAD TGWQCMIPAD VGLDLQSPDG  360
TVLGPLWGTE QNPPLEFDCC DSLQRPLGDD WEYGPGEFGM LDADILSSPI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15160216663ATERF1
3gcc_A2e-15160216663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406908.20.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM0TC720.0M0TC72_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-35ERF family protein