PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 287aa    MW: 31053.3 Da    PI: 4.5752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1973123155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa  ++ a+++l+g
  GSMUA_Achr6P32030_001  73 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAAMVYDCAALQLRG 123
                            69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-2773130No hitNo description
PfamPF008473.1E-1273123IPR001471AP2/ERF domain
PROSITE profilePS5103222.56374131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2974132IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2274132IPR016177DNA-binding domain
SMARTSM003808.1E-3574137IPR001471AP2/ERF domain
PRINTSPR003673.9E-107586IPR001471AP2/ERF domain
PRINTSPR003673.9E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKKARTLRIF WTDPEATDSS GDDEECGVSG RRVGRLVREI GLDPCPAVVD KPRRARKKAP  60
AGGGKVASQT GSTKFRGVRR RPWGKYAAEI RDPWRGVRVW LGTFDTAEEA AMVYDCAALQ  120
LRGPGATTNF SSSSSSSTTP APPQVAEEAS DPTTVSAGYD SGDDSQSRTS PTSVLRGFSS  180
YSAVQGPATE ETKKGADVFN PAVFLPEMTV EEFSPFEDMP LFNDSSCFET WEPRIPEATT  240
ARVGFSAAAD PSTTAWDSGF GSATWHEDDY FHEIGDLFPL EPLPAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2062130471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275167e-53KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406812.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLM0TBZ80.0M0TBZ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-36cytokinin response factor 4