PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 295aa    MW: 33233.3 Da    PI: 9.3691
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-07123156137
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                            s+y+GV +++ +g+W+A++   +   g +k+ +lg++ 
  GSMUA_Achr6P30870_001 123 SRYRGVARHHHSGKWEARLGRvF---G-NKYLYLGTYA 156
                            79****99**********87755...3.6********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.8252688IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-72889IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-73790IPR016177DNA-binding domain
SMARTSM003800.00294694IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-5123157IPR016177DNA-binding domain
SMARTSM003807.3E-8124231IPR001471AP2/ERF domain
PROSITE profilePS5103211.838124225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-6199226IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-5199227IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGKNQKKDTM LQGIHLVRSV AQFTVASRGI GGRDDSRLIC GIRTAGINPR TRKGNKACRA  60
YGDEEAAARA YDLAALKYWG HNTILNFPIS TYQEELEKME GQSKEEYIGS LRRKSSGFSR  120
GVSRYRGVAR HHHSGKWEAR LGRVFGNKYL YLGTYANRLR VLLIRLSFKE RGCSVGELEE  180
HIPFNGGSLM TILSPFTQPT QEEAAAAYDM AAIEHRGLSA VTNFDLSRYS SSKSERRSPE  240
RKSPPQPPPP YLSSSRPSKC SFPEDIQTYF ECQDSEFYLE GEDSNFWGST TFIDL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406669.13e-93PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN48e-50AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM0TBN20.0M0TBN2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-48AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]