PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P30570_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 325aa MW: 36294.5 Da PI: 8.3065

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P30570_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.3e-55	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+Ptdeel+++yL+kkv++ ++++ +i evd++k+ePwdLp k+k++ekewyfF+ rd+ky+tg r+nratk+gyWkatgk GSMUA_Achr6P30570_001 18 LPPGFRFQPTDEELITHYLAKKVTDASFHA-VAIGEVDLNKYEPWDLPCKAKTGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGK 104 79***********************999.67***********99999******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d+++++ ++ lvg+kktLvfy+grapkgek++Wvmheyrle GSMUA_Achr6P30570_001 105 DNAIYR-EKILVGMKKTLVFYTGRAPKGEKSNWVMHEYRLE 144 **.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	14	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.064	18	170	IPR003441	NAC domain
Pfam	PF02365	2.2E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEDGVAVLSR GKNQVMELPP GFRFQPTDEE LITHYLAKKV TDASFHAVAI GEVDLNKYEP 60 WDLPCKAKTG EKEWYFFCVR DRKYPTGLRT NRATKAGYWK ATGKDNAIYR EKILVGMKKT 120 LVFYTGRAPK GEKSNWVMHE YRLEGKCYVH NLPPKMIAMN EWVVCRIFHK ISSIKKPVKA 180 DVSLVPPANE NDDISKNEAF PTFDSPNVTC FSNTTGINDE LLDECFRFPS AAARQGSPTP 240 RFLSMMCLSS SLCSSGMQSP PDVSSVKKQM SGTELLSASW DSGFTSVISS IVSSDESGKR 300 PFAAQEIPSA SAGHILLADR CLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	16	176	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	16	176	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	16	176	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	16	176	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	16	176	18	174	NAC domain-containing protein 19
3swm_B	3e-55	16	176	18	174	NAC domain-containing protein 19
3swm_C	3e-55	16	176	18	174	NAC domain-containing protein 19
3swm_D	3e-55	16	176	18	174	NAC domain-containing protein 19
3swp_A	3e-55	16	176	18	174	NAC domain-containing protein 19
3swp_B	3e-55	16	176	18	174	NAC domain-containing protein 19
3swp_C	3e-55	16	176	18	174	NAC domain-containing protein 19
3swp_D	3e-55	16	176	18	174	NAC domain-containing protein 19
4dul_A	3e-55	16	176	15	171	NAC domain-containing protein 19
4dul_B	3e-55	16	176	15	171	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406637.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLR3	1e-100	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	M0TBK2	0.0	M0TBK2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P30570_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-97	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]