PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P30550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 398aa MW: 41974.3 Da PI: 8.6586

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P30550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.5e-15	320	370	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+++ e+ ++ GSMUA_Achr6P30550_001 320 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEQNQELQEKQAEMMEM 370 79***************************************9887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	316	380	No hit	No description
SMART	SM00338	7.0E-13	316	381	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.128	318	369	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.31E-11	320	370	No hit	No description
Pfam	PF00170	5.0E-13	320	372	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.39E-27	320	374	No hit	No description
PROSITE pattern	PS00036	0	323	338	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDFKSLGGGG GGAGGEPPVP PPLARQGSVY SLTMDEFQST LGGIGKDFGS MNMDELLRNI 60 WTAEESYAMT AALGDGSGPG SGLQRQGSLT LPRTLSQKTV DEVWRDLVGH SSSCSQVPAV 120 RGLDVPRQST LREMTLEEFL VRAGVVREDM APPQAPSRPT NNTSNDTSVF YGDLPAVNSS 180 AGLDLGFSQA PAGSTGNIVD APIPHGSAAN LGMTVTAARL YAPPMTLGNG VDLANPQGMT 240 GGGLVGFGHA DVRNGLTTGI LGLGAAGVLA ASGSPADHLS SDRLGKGNGD LSSVSPVPYV 300 FSGGMRGRKG NGALEKVVER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEQNQEL 360 QEKQAEMMEM QKNQVLQMIN QQHGPKKKCL RRTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDFKSLGGGG GGAGGEPPVP PPLARQGSVY SLTMDEFQST LGGIGKDFGS MNMDELLRNI  60
WTAEESYAMT AALGDGSGPG SGLQRQGSLT LPRTLSQKTV DEVWRDLVGH SSSCSQVPAV  120
RGLDVPRQST LREMTLEEFL VRAGVVREDM APPQAPSRPT NNTSNDTSVF YGDLPAVNSS  180
AGLDLGFSQA PAGSTGNIVD APIPHGSAAN LGMTVTAARL YAPPMTLGNG VDLANPQGMT  240
GGGLVGFGHA DVRNGLTTGI LGLGAAGVLA ASGSPADHLS SDRLGKGNGD LSSVSPVPYV  300
FSGGMRGRKG NGALEKVVER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEQNQEL  360
QEKQAEMMEM QKNQVLQMIN QQHGPKKKCL RRTQTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406635.1	0.0	PREDICTED: bZIP transcription factor TRAB1 isoform X1
Swissprot	Q9M7Q4	1e-104	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	M0TBK0	0.0	M0TBK0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P30550_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-92	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]