PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 522aa    MW: 56380.2 Da    PI: 6.3301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09305352455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSMUA_Achr6P27780_001 305 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 352
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-10299356No hitNo description
SuperFamilySSF474592.88E-17299371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17301369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6305352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEKERFFGVN WQSMDAGMPP EMNSRAAAAD QLPNSFLNLG WEQPMHHDAH FESALSSLVS  60
SPSSNTPAGN DSVIIGELIG RLGSICNSGE VSPPSRYQSA NTSCYSTPLN SPPKLNLSGM  120
DHQQQGRGGV PVPGNQMAAG KFSPFAADPG FAERAARFSC FGARGYAGLG GQFGLPEAGK  180
LSRFGGEAEF GNSQEASSVS DRTTAVGAEN NARKRKAASK GKAKGAPLSS SNMNPPKPSD  240
GENSDAKRCK PAETDGADKD AAVKPKTEEN GDVGRKQGEE GNAKPPEPPK DYIHVRARRG  300
QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM  360
KLAALNPQLD FNMEALLPKD MHQVLGQLPQ QVYPLDMAST AFSYAQQPQG TPLQSIVTNS  420
LDVQGSLNPL ESSLRRPPTM QLPRLDGFTD ATSQLGNLWE DDLQYVVQMG LGQSQGTAFS  480
SQTMPVDLNL RDFTLKGLSN NYIAFLFMFI LLDLPHPQSY GT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406341.10.0PREDICTED: transcription factor bHLH62
TrEMBLM0TAS30.0M0TAS3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-83bHLH family protein