PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 232aa    MW: 25013.8 Da    PI: 8.2124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20109143135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  GSMUA_Achr6P27250_001 109 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 143
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-14101144No hitNo description
PROSITE profilePS5011414.312103139IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-20103154IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-17107143IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.44E-13108140No hitNo description
PROSITE patternPS003440109134IPR000679Zinc finger, GATA-type
PfamPF003205.1E-18109143IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLHQCGHQSS TQQCSCGLLC GGAASFSIFF PASGSKFTDD DAFDGSKSDA SSSVDCTLSL  60
GTPSTRLTEH KTLPSPTAHI QPPSCMSSFR WDSLSHPKKH ASMGTARRCA NCDTTSTPLW  120
RNGPRGPKSL CNACGIRYKK EERRAAASPS SSTSVVTAAA EQTIGYGYIR QQQPQQSPWG  180
CYAPTATKSG PSISVHDDTA DEGDVPYLSW RLNLVPPTQF PVRDRPSLFQ YN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406295.11e-157PREDICTED: GATA transcription factor 19-like
TrEMBLM0TAM01e-171M0TAM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27250_0011e-171(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.18e-34GATA family protein